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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99909023_99909100_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99909023 - 99909100
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
GGCCTATACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTGTAGTAATA
Flanking Amino Acid:
VIQEYKIWCLGIQYRVEVAA
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
60.2
0.23
1
50.6
42.2
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
44.9
-0.3
2.2
59.09
41.6

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020165
99843306 - 100074452
231147
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000021774
99843306 - 100074452
231147