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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99912065_99917622_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99912065 - 99917622
Intron Length:
5558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTCCTTCTGT
Flanking Amino Acid:
ESKSARTTEEAPSAPPQSVT
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.3
0.52
1
68.6
42
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
42.2
-0.5
3.7
76.39
46

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021774
99843306 - 100074452
231147
ENSAPLT00000020165
99843306 - 100074452
231147
ENSAPLT00000019067
99843306 - 99992484
149179
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000007504
99843306 - 100181763
338458
ENSAPLT00000031884
99843306 - 99992484
149179