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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99917855_99924854_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99917855 - 99924854
Intron Length:
7000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGCTT
5'SS Class:
major
3'SS Sequence:
ATGCCATGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTTATTGACA
Flanking Amino Acid:
TPTTVQVTWTVDRQSQFIQG
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
67.5
43.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
60.5
0.24
1
51.6
42.4
Minor 5ss
38.9
-1.3
3.6
62.2
43.2
Minor BPS
65.3
0.48
1.6
76.12
34.3

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007504
99843306 - 100181763
338458
ENSAPLT00000031884
99843306 - 99992484
149179
ENSAPLT00000021774
99843306 - 100074452
231147
ENSAPLT00000020165
99843306 - 100074452
231147
ENSAPLT00000019067
99843306 - 99992484
149179
ENSAPLT00000039440
99843306 - 100074452
231147