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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99929150_99930891_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
99929150 - 99930891
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TAATCTTCAACT
Flanking Amino Acid:
PASAYIIEAFSQSVSNSWQT
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.7
81.8
28.4
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
70.3
0.72
1.5
82.69
38.1

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021774
99843306 - 100074452
231147
ENSAPLT00000020165
99843306 - 100074452
231147
ENSAPLT00000019067
99843306 - 99992484
149179
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000007504
99843306 - 100181763
338458
ENSAPLT00000031884
99843306 - 99992484
149179