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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99931892_99935441_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99931892 - 99935441
Intron Length:
3550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGCCCTTAAAT
Flanking Amino Acid:
QGTLQIKTLRLSDTGTYTCV
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
76.5
0.6
0.9
70
40.5
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
69.3
0.68
1.5
78.84
42.9

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020165
99843306 - 100074452
231147
ENSAPLT00000019067
99843306 - 99992484
149179
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000007504
99843306 - 100181763
338458
ENSAPLT00000031884
99843306 - 99992484
149179
ENSAPLT00000021774
99843306 - 100074452
231147