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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99991612_100074247_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99991612 - 100074247
Intron Length:
82636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCGATGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTCCCTCATTT
Flanking Amino Acid:
KCLGFDITPIVLRDDFRQNP
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
70.8
0.47
1
70.8
39.7
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
54.3
0.21
1.8
73.65
43.4

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039440
99843306 - 100074452
231147
ENSAPLT00000021774
99843306 - 100074452
231147
ENSAPLT00000020165
99843306 - 100074452
231147