About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_99991612_100181744_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99991612 - 100181744
Intron Length:
190133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCGATGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TCTCCCTCATTT
Flanking Amino Acid:
MKISCSVLRDDFRQNP
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
32.3
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
70.8
0.47
1
70.8
39.7
Minor 5ss
24.1
-3
3.3
31
43.4
Minor BPS
54.3
0.21
1.8
73.65
43.4

Associated Gene:

Gene:
ROBO2
Ensembl Gene ID:
ENSAPLG00000007198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007504
99843306 - 100181763
338458