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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10002531_10003051_R

Intron Information:

Intron Rank:
34
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10002531 - 10003051
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGGGGGCCTCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTCCTGTATG
Flanking Amino Acid:
KFFTFRARDKFEEDRIYRHL
Intron Amino Acid Position:
1305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
69.7
43.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
59.7
0.22
1.1
47.2
45.9
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
54.6
-0
1.9
64.01
44

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013