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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10003094_10005805_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10003094 - 10005805
Intron Length:
2712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAC
Flanking Amino Acid:
VNCEVDQRFHREFPKFFTFR
Intron Amino Acid Position:
1291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.2
0.61
1
74.4
39
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
70.6
0.62
1.3
75.99
33.7

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000039117
9947556 - 10064568
117013