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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10005851_10006171_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10005851 - 10006171
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCG
5'SS Class:
major
3'SS Sequence:
TTTCGCTTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTCGCTTGTAAG
Flanking Amino Acid:
RRLTFLVAQKDFRKQVNCEV
Intron Amino Acid Position:
1276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.5
40.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
65.9
0.36
1.2
71.6
38.5
Minor 5ss
43.2
-0.7
3
56.7
47.6
Minor BPS
42.8
-0.7
2
48.72
45.1

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036264
9947556 - 10062330
114775
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000038991
9948784 - 10062330
113547