Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10010585_10013207_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10010585 - 10013207

Intron Length:

2623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTAC

5'SS Class:

strong_major

3'SS Sequence:

CATTGCCGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGCAT

U12 Branch Point Sequence:

CCTTCTTGCATT

Flanking Amino Acid:

PNRGNIPTLNRMSFSSNLNH

Intron Amino Acid Position:

1140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

71.8

34.3

Major BPS

62.7

0.32

1.4

39.9

Major PPT

65.8

0.36

62.6

39.4

Minor 5ss

43.1

-0.8

3.1

57.8

47.2

Minor BPS

49.2

0.02

1.9

67.73

44.1

Associated Gene:

Gene:

ACACA

Ensembl Gene ID:

ENSAPLG00000006678

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019744

9947556 - 10049194

101639

ENSAPLT00000039017

9947556 - 10062330

114775

ENSAPLT00000007210

9949008 - 10051639

102632

ENSAPLT00000038991

9948784 - 10062330

113547

ENSAPLT00000036264

9947556 - 10062330

114775

ENSAPLT00000033706

9948784 - 10062330

113547