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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10027309_10028554_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10027309 - 10028554
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CACTTCTGATTG
Flanking Amino Acid:
YLKVETQFQHGHYDKCVFAL
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
64.9
41.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.7
0.67
0.9
73.4
35.7
Minor 5ss
29.3
-2.4
2.8
32.5
36
Minor BPS
45.1
-0.5
1.7
44.34
42.2

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013