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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10029398_10030000_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10029398 - 10030000
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCAAC
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
AGGACTGGAACT
Flanking Amino Acid:
SVLCQFPSQQIANILDSHAA
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
70.3
35.7
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
34.3
-1.8
2.9
42.6
44.5
Minor BPS
44.7
-0.3
2.1
60.73
42.7

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775