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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10034992_10035331_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10034992 - 10035331
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGATC
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAC
U12 Branch Point Sequence:
TTCTATGTACTC
Flanking Amino Acid:
LDRLIAEKVQAERPDTMLGV
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1
66.5
39
Major BPS
53.8
0.1
1.4
55.4
41.7
Major PPT
87.4
0.84
0.6
81
31
Minor 5ss
29.7
-2.3
3.5
42.1
44.9
Minor BPS
43.4
-0.5
2.3
58.1
41.8

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775