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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10043754_10044206_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10043754 - 10044206
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TATGTGTTATGT
Flanking Amino Acid:
LDIAKRIPVQAVWAGWGHAS
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
86.2
0.82
0.7
81.2
30.8
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
42.4
-0.5
2.4
63.84
46.7

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775