About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10067479_10067893_F

Intron Information:

Intron Rank:
59780
Intron Class:
major
Intron Phase:
Intron Coordinates:
10067479 - 10067893
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AGATTTAAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81.5
0.71
0.8
72.9
37.4
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
45.6
-0.3
1.8
54.77
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008887
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009234
10065932 - 10068649
2718