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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10068008_10068584_F

Intron Information:

Intron Rank:
59781
Intron Class:
major
Intron Phase:
Intron Coordinates:
10068008 - 10068584
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
TATCTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATATTCTTACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
66.7
40.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.6
0.71
0.8
78.4
34.3
Minor 5ss
39.6
-1.2
3
44.8
43.3
Minor BPS
55.8
0.26
1.9
74.5
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008887
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009234
10065932 - 10068649
2718