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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10073116_10073807_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10073116 - 10073807
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTGGCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAC
U12 Branch Point Sequence:
TGTTCCATGAGA
Flanking Amino Acid:
MERLASFSNDPFDKPPCR
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
61
0.27
1.2
55.4
41.7
Major PPT
78.7
0.65
0.9
72.3
37.9
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
56.8
0.21
2
72.49
39.2

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326