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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10073915_10074826_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10073915 - 10074826
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTTTGTTCCACA
Flanking Amino Acid:
GPPPFLLCLQCFTRGFEYKK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
34.7
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
85
0.79
0.8
80.2
32
Minor 5ss
31.2
-2.2
3.2
38.8
46.5
Minor BPS
48.1
-0.1
2.3
71.01
41.7

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326