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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10075618_10077072_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10075618 - 10077072
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATATTAAGC
Flanking Amino Acid:
EAVMDCGFGNWQDVANQMCT
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.8
0.69
0.8
77.9
29.2
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
49.5
-0
1.9
63.57
42

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326