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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10079387_10083895_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10079387 - 10083895
Intron Length:
4509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTTTCTAATC
Flanking Amino Acid:
FVEDDSDILHALKIAVVDIY
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
70.1
40.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.8
0.87
0.7
84.2
30.4
Minor 5ss
36
-1.6
2.9
47
41.2
Minor BPS
61
0.33
1.6
71.55
33.5

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326