About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10083960_10085939_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10083960 - 10085939
Intron Length:
1980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGCTCTTAATT
Flanking Amino Acid:
SRLKERQRRKKIIRDHGLIN
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.8
0.67
0.9
73.2
34.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
75.8
0.89
1.1
84.85
35.9

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326