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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10085984_10086941_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10085984 - 10086941
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCCCCCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
CATTGCTGACAA
Flanking Amino Acid:
HGLINLRKFQILERRYPKEV
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
79.7
0.67
0.7
74.5
23.7
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
43.2
-0.5
2.1
54.54
43.7

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326