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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10087053_10088454_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10087053 - 10088454
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
TGGGGTAAACCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGGGGTAAACC
Flanking Amino Acid:
EHDKFIESHALEFELRREIK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
79.9
34.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
50.7
0.02
1.1
41.5
46.4
Minor 5ss
37.3
-1.4
3.3
54.9
42.7
Minor BPS
41.4
-0.6
2.6
57.14
47.8

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326