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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10088527_10089123_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10088527 - 10089123
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTGTTACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TGTGCTATAATG
Flanking Amino Acid:
YRAAGITNFCSARTYDHLKK
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.3
34.1
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
71.7
0.49
0.9
62.7
38.7
Minor 5ss
38.9
-1.3
2.7
49
34.4
Minor BPS
52.5
-0
1.8
60.65
41.7

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326