About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10089257_10089942_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10089257 - 10089942
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTACGGTTA
5'SS Class:
major
3'SS Sequence:
CCTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ACAAATTGAAAT
Flanking Amino Acid:
CQQWLSRQADIDSGLTPAAP
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
68.9
38.4
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
89.7
0.89
0.6
87.8
22.3
Minor 5ss
41.7
-0.9
3.6
59.1
45.9
Minor BPS
44.3
-0.3
1.6
55.55
39.7

Associated Gene:

Gene:
TADA2A
Ensembl Gene ID:
ENSAPLG00000008896
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009294
10072294 - 10094619
22326