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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10123690_10126440_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10123690 - 10126440
Intron Length:
2751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCCA
5'SS Class:
major
3'SS Sequence:
TTCATTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AATGCCTAAATT
Flanking Amino Acid:
ISFMSLAALTPDENSLDFSS
Intron Amino Acid Position:
1331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
63.6
42.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.3
0.73
0.7
81.3
30.6
Minor 5ss
31.5
-2.1
3.3
40.8
45
Minor BPS
60.5
0.41
1.8
75.28
41.8

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023464
10120780 - 10155596
34817
ENSAPLT00000010070
10121544 - 10159748
38205
ENSAPLT00000034109
10120780 - 10159748
38969
ENSAPLT00000030524
10120780 - 10159748
38969
ENSAPLT00000025003
10120780 - 10155596
34817