Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10126590_10126874_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10126590 - 10126874

Intron Length:

285

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTCAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTTTATTCAACA

Flanking Amino Acid:

QSAQGMEYLLGVVEVYRVTK

Intron Amino Acid Position:

1281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

89.6

24.2

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

81.6

0.71

0.9

34.9

Minor 5ss

57.8

0.27

2.3

75.5

40.6

Minor BPS

66.7

0.52

1.7

80.77

34.6

Associated Gene:

Gene:

SYNRG

Ensembl Gene ID:

ENSAPLG00000009643

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030524

10120780 - 10159748

38969

ENSAPLT00000025003

10120780 - 10155596

34817

ENSAPLT00000023464

10120780 - 10155596

34817

ENSAPLT00000010070

10121544 - 10159748

38205

ENSAPLT00000034109

10120780 - 10159748

38969