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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10129442_10137868_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10129442 - 10137868
Intron Length:
8427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CAGCTTCTAATT
Flanking Amino Acid:
TVSGQHPPAADIDDLKCAPF
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
91.4
0.93
0.6
91.5
19.8
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
47
-0.1
1.6
58.3
39.3

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025003
10120780 - 10155596
34817
ENSAPLT00000023464
10120780 - 10155596
34817
ENSAPLT00000010070
10121544 - 10159748
38205
ENSAPLT00000034109
10120780 - 10159748
38969
ENSAPLT00000030524
10120780 - 10159748
38969