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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10140825_10140994_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10140825 - 10140994
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCACATTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACAT
Flanking Amino Acid:
EKPESTATFGDCGDKYSAFR
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.5
36.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
62.5
0.28
0.9
55.7
39.5
Minor 5ss
29.1
-2.4
3.4
38.8
46.3
Minor BPS
49.8
0.07
1.9
72.8
44.1

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010070
10121544 - 10159748
38205
ENSAPLT00000034109
10120780 - 10159748
38969
ENSAPLT00000030524
10120780 - 10159748
38969
ENSAPLT00000025003
10120780 - 10155596
34817
ENSAPLT00000023464
10120780 - 10155596
34817