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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10144790_10145470_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10144790 - 10145470
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAG
U12 Branch Point Sequence:
GTGTACTATACA
Flanking Amino Acid:
SVLAMIAVTQRGIPAVSPDV
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.2
38.2
Major BPS
51
0.03
1.5
67
39.8
Major PPT
82.7
0.73
0.8
76.6
32
Minor 5ss
36.7
-1.5
3.2
49.9
46.3
Minor BPS
46.9
-0.2
2.1
61.03
44.5

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025003
10120780 - 10155596
34817
ENSAPLT00000023464
10120780 - 10155596
34817
ENSAPLT00000010070
10121544 - 10159748
38205
ENSAPLT00000034109
10120780 - 10159748
38969
ENSAPLT00000030524
10120780 - 10159748
38969