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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10148944_10151143_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10148944 - 10151143
Intron Length:
2200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
GCTGTTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATATAAATAATT
Flanking Amino Acid:
PTPASHPKKPGSSLEKVLDN
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
71.7
39.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
75.9
0.58
1
73.3
41.1
Minor 5ss
38.3
-1.3
2.8
50.3
46
Minor BPS
48.2
-0
2
71.11
39

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030524
10120780 - 10159748
38969