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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10149977_10151143_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10149977 - 10151143
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
TTGCATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCCTCATCACT
Flanking Amino Acid:
PTPASHPKKPDHPTSSHSAV
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
71.7
39.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
82.1
0.72
0.9
76
37.6
Minor 5ss
38.3
-1.3
2.8
50.3
46
Minor BPS
49.4
0.03
2
73.75
43

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034109
10120780 - 10159748
38969
ENSAPLT00000025003
10120780 - 10155596
34817
ENSAPLT00000010070
10121544 - 10159748
38205