About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10152014_10152297_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10152014 - 10152297
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TATTTTGCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
DMQKQFAEEQQKRFEHQQKF
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.8
0.76
0.9
81.6
35.8
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030524
10120780 - 10159748
38969
ENSAPLT00000025003
10120780 - 10155596
34817
ENSAPLT00000023464
10120780 - 10155596
34817
ENSAPLT00000010070
10121544 - 10159748
38205
ENSAPLT00000034109
10120780 - 10159748
38969