About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10152429_10154353_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10152429 - 10154353
Intron Length:
1925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GGAGCTGTAATA
Flanking Amino Acid:
QMPPGPMAMQGGMPLGTMPA
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
68.4
36.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
88.3
0.86
0.8
83.9
31
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
45.9
-0.3
2
53.16
39.6

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025003
10120780 - 10155596
34817
ENSAPLT00000023464
10120780 - 10155596
34817
ENSAPLT00000010070
10121544 - 10159748
38205
ENSAPLT00000034109
10120780 - 10159748
38969
ENSAPLT00000030524
10120780 - 10159748
38969