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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10155601_10159647_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10155601 - 10159647
Intron Length:
4047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCT
5'SS Class:
major
3'SS Sequence:
CCTCCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATGTACC
Flanking Amino Acid:
GGAPGGAGGASFMFPVAGGL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
71.9
36.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.2
0.7
0.7
72.4
32.3
Minor 5ss
29.3
-2.4
3.3
41.8
44.9
Minor BPS
49.7
-0
2.1
68.94
42.2

Associated Gene:

Gene:
SYNRG
Ensembl Gene ID:
ENSAPLG00000009643
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030524
10120780 - 10159748
38969
ENSAPLT00000010070
10121544 - 10159748
38205
ENSAPLT00000034109
10120780 - 10159748
38969