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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10179103_10179204_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10179103 - 10179204
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
TCCCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CCGGCGCTCACT
Flanking Amino Acid:
PLSGVMAIAQSLNTSQAQSV
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
65.3
40.7
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
81.1
0.7
0.7
72.9
32
Minor 5ss
40.9
-1
2.8
46.7
42.5
Minor BPS
37.2
-0.9
2.5
51.3
49

Associated Gene:

Gene:
HNF1B
Ensembl Gene ID:
ENSAPLG00000027870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021912
10178366 - 10194960
16595