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Intron Name: Anas_platyrhynchos_platyrhynchos_20_10179338_10182075_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10179338 - 10182075

Intron Length:

2738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TGCTCCTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAT

U12 Branch Point Sequence:

TGTGCCTGATGT

Flanking Amino Acid:

HGLLSPDGKMISVSGGGLPP

Intron Amino Acid Position:

378

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.8

78.5

30.1

Major BPS

0.27

1.3

53.3

44.2

Major PPT

72.6

0.51

68.9

37.1

Minor 5ss

30.7

-2.2

2.5

31.6

35.9

Minor BPS

47.5

-0.1

2.1

69.48

46.9

Associated Gene:

Gene:

HNF1B

Ensembl Gene ID:

ENSAPLG00000027870

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046404

10176515 - 10194960

18446

ENSAPLT00000021912

10178366 - 10194960

16595