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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10182240_10188283_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10182240 - 10188283
Intron Length:
6044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
ATGCCAACACCT
Flanking Amino Acid:
PSASPPSKMPGVRYSQAAGG
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
70
0.5
1
59.3
39.1
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
39.6
-0.7
2.1
58.79
43.5

Associated Gene:

Gene:
HNF1B
Ensembl Gene ID:
ENSAPLG00000027870
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021912
10178366 - 10194960
16595