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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10206734_10207203_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10206734 - 10207203
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTATTACTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTTCTATTACT
Flanking Amino Acid:
NVFKNTALPLGEAPWTTQAY
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
68.9
0.42
0.9
68.1
37.5
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
59.5
0.38
1.9
82.04
38.9

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047