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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10207933_10208628_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10207933 - 10208628
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACGTCAG
5'SS Class:
major
3'SS Sequence:
ATCCTTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TCTTTCACAATG
Flanking Amino Acid:
GNLTDTLIVNMETMGQSFQE
Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
62
44.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
67.9
0.4
1
62.2
39.2
Minor 5ss
34.9
-1.7
3.2
45
43.1
Minor BPS
49.5
-0.1
1.9
59.92
42.4

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047