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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10208754_10209547_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10208754 - 10209547
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAACT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTAATAACT
Flanking Amino Acid:
VYILFSCLRQDVMFVADTAN
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
78.1
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.3
0.75
0.7
79.7
25.9
Minor 5ss
31.5
-2.1
2.8
42.1
44.1
Minor BPS
58.6
0.35
1.9
83.75
36.2

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047