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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10209671_10210826_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10209671 - 10210826
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAG
5'SS Class:
major
3'SS Sequence:
CTTCTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTACCACAACT
Flanking Amino Acid:
ILPEAFGSLQNDQQILCITL
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
66
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.2
0.77
0.8
81.5
28.8
Minor 5ss
35.3
-1.7
3.4
46.6
48.7
Minor BPS
57.1
0.3
1.9
79.65
41.4

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047