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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10214832_10215015_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10214832 - 10215015
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGACAG
5'SS Class:
major
3'SS Sequence:
TTTGTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTTTTGTCATT
Flanking Amino Acid:
TIALKDPSPKTRACSLQVLS
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
63.7
42.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
27.7
-2.6
2.8
30.5
42.7
Minor BPS
46.5
-0.1
2.3
71.21
40.9

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047