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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10215194_10215583_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10215194 - 10215583
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTATTGTT
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATTCCATTAATC
Flanking Amino Acid:
DAEGGIQSKTRSYQAKVRQG
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
79.2
34.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
76
0.59
1.1
79.7
37.4
Minor 5ss
35
-1.7
3.2
50.5
45.8
Minor BPS
67.5
0.53
1.5
75.93
33.5

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047