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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10217140_10217493_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10217140 - 10217493
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACG
5'SS Class:
strong_major
3'SS Sequence:
GTTACTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
GTTTCTGTTACT
Flanking Amino Acid:
QLGSLLAVLKKCMFHGLPGL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
36.9
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
79.4
0.66
0.9
69.8
41.3
Minor 5ss
35.4
-1.7
2.7
43.2
43.8
Minor BPS
54.3
0.22
2.3
80.6
41.3

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047