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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10217976_10218595_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10217976 - 10218595
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTACC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTAATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTTGCTTTAATT
Flanking Amino Acid:
ALHSMANLCLSVPGQPYLDE
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.1
34.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
74.2
0.55
0.9
71.2
38.6
Minor 5ss
30.5
-2.2
2.8
37.5
39.9
Minor BPS
73.1
0.8
1.3
82.98
39.3

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047