About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10220347_10220625_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10220347 - 10220625
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCCGC
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TAATTCATAATT
Flanking Amino Acid:
PAAVAGPSPQDVCALLVQAC
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
48.9
47.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84.4
0.77
0.8
76.5
37.6
Minor 5ss
42.4
-0.8
3.2
59.6
45.1
Minor BPS
64.5
0.53
1.6
78.87
36.9

Associated Gene:

Gene:
HEATR6
Ensembl Gene ID:
ENSAPLG00000010712
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011234
10205759 - 10220805
15047