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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10230558_10232229_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10230558 - 10232229
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTGGGTTG
5'SS Class:
weak_major
3'SS Sequence:
GTCTCAGGCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACACAA
U12 Branch Point Sequence:
TCAGCCGTGAGT
Flanking Amino Acid:
AKVSANNAVPTAPSPLGYLL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58
0.19
1.3
56.2
43.5
Major BPS
49.3
-0
0.9
56.6
29.3
Major PPT
45.3
-0.2
1.7
45.4
40.5
Minor 5ss
37
-1.5
3.5
47.7
42.6
Minor BPS
44.8
-0.3
2.3
63.11
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024922
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027884
10230379 - 10236611
6233