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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10247933_10248202_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10247933 - 10248202
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
ACCCGGCCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
ACCGCCACGACC
Flanking Amino Acid:
PFAFVEFEDPRDAEDAVYGR
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
58.7
0.2
0.9
49.9
33.5
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
43.3
-0.5
1.9
48.97
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023990
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023608
10247739 - 10249307
1569